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ClustalW2

ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
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YOUR EMAIL	ALIGNMENT TITLE	RESULTS	ALIGNMENT

KTUP (WORD SIZE)	WINDOW LENGTH	SCORE TYPE	TOPDIAG	PAIRGAP

MATRIX	GAP OPEN	NO END GAPS	GAP EXTENSION	GAP DISTANCES

ITERATION	NUMITER

OUTPUT		PHYLOGENETIC TREE
OUTPUT FORMAT	OUTPUT ORDER	TREE TYPE	CORRECT DIST.	IGNORE GAPS	CLUSTERING

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